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Data files that have multiple sequences, such as those required for multiple sequence alignment and phylogenetic analysis using parsimony (PAUP), are not converted in READSEQ.

Data files that have multiple sequences, such as those required for multiple sequence alignment and phylogenetic analysis using parsimony (PAUP), are not converted in READSEQ. Correct Answer True

Data files with such multiple sequences as mentioned are converted in READSEQ. Options to reverse-complement and to remove gaps from sequences are included. SEQIO and another sequence conversion program for a UNIX machine.

Related Questions

In protein/domain analysis, each protein in the predicted proteome is again used as a query of a curated protein sequence database such as ____ in order to locate similar domains and sequences. To find orthologs, very low E value scores (E<10<20) for the alignment score and an alignment that includes 60–80% of the query sequence are generally required in order to avoid matches to paralogs.
Phylogenetic analysis of a set of sequences that aligns ______ is straightforward because the positions that correspond in the sequences can be readily identified in a ______ of the sequences.
The resulting tree is then used to guide the alignment of the most closely related sequences and groups of sequences. The resulting alignment is a global alignment produced by the Needleman-Wunsch algorithm.
Five delegates P, Q, R, S and T are forwarding their files to one another. P sends his file to Q, S and T, T sends his files to R while P and R exchange their files with each other. Q sends his file to S who sends his files to T. If P has to forward his files to R, then in how many ways P can forward files to R?
Progressive alignment methods use the dynamic programming method to build an MSA starting with the most related sequences and then progressively adding less related sequences or groups of sequences to the initial alignment.
The question given below consists of a statement, followed by three arguments numbered I, II and III. You have to decide which of the arguments is/are ‘strong’ arguments and which is/are ‘weak’ arguments and accordingly choose your answer from the alternatives given below each question. Statement: India’s telecom watchdog has suggested regulation of all entities dealing with consumer data—devices such as iPhones, operating systems such as Android, browsers like Google’s Chrome and apps such as Facebook, Paytm, Uber or Zomato— by bringing them under licence conditions that apply to telecom service providers until a general data protection law is put in place by the government. Which of the following argument weakens the above statement in the best possible manner? Arguments: I. The Telecom Regulatory Authority of India (Trai) said the framework for protection of personal information is ‘not sufficient’ and that the issue of data ownership, privacy, and security is complex and multi-dimensional. It suggested expanding the ambit of licence conditions governing telcos to all entities handling customer information and empowerment of customers to keep their data secure. II. The telecom watchdog further said that individual users owned their data, or personal information, and entities such as devices were ‘mere custodians’ and do not have primary rights over that information. III. Telcos and internet service providers (ISPs) though welcomed recommendations that sought to bring app makers under the same regulations. However, content providers have been opposed to being brought under more regulation. 
Each item consists of six sentences of a passage. The first and sixth sentences are given in the beginning as S1 and S6. The middle four sentences in each have been jumbled up and labelled as P, Q, R and S. You are required to find the proper sequence of the four sentences and markyour response accordingly on the Answer Sheet.
S1 :The dawn of the information age opened up great opportunities for the beneficial use of data.
S6 :To some, in this era of Big Data analytics and automated, algorithm-based processing of zettabytes of information, the fear that their personal data may be unprotected may conjure up visions of a dystopian world in which individual liberties are compromised.
P :But it is the conflict between the massive scope for progress provided by digital era and the fear of loss of individual autonomy that is foregrounded in any debates about data protection laws.
Q : It also enhanced the perils of unregulated and arbitrary use of personal data.
R : It is against this backdrop that the White Paper made public to elicit views from the public on the shape and substance of a comprehensive data protection law assumes significances.
S :Unauthorised leaks, hacking and other cyber crimes have rendered databases vulnerable.
The correct sequence should be
In PAUP, to complete an analysis the user is not required to move between different subprograms while keeping modifying names of the intermediate output files.
In the question below, are given a statement followed by three courses of actions numbered I, II and III. On the basis of the information given, you have to assume everything in the statement to be true, and then decide which of the suggested course of action logically follow (s) for pursuing. Statement: The India Risk Survey 2017 report ranks 'Information & Cyber Insecurity' as the biggest risk facing Indian companies. Indian organizations, both public and private, had witnessed over 27,000 incidents of security threat, from January 2017 till June 2017 alone. Phishing, scanning/probing, website intrusions and defacements, virus/malicious code, ransomware, Denial of Service attacks, and data breaches are some ways in which hackers attack business websites, which can cause operational disruptions and potentially steal sensitive information. Small and medium businesses (SMBs), unfortunately, have been seeing rising incidences of cybercrime. In fact, 70 percent of cyberattacks occur at organizations with lesser than 100 employees  Courses of action: I. Mandate basic security practices and policies for all employees, such as 2-factor authentication, internet use guidelines and create and enforce rules on handling and protecting sensitive data. Conduct frequent training to sensitize employees about opening suspicious emails, encrypting their data, using strong passwords on their devices, installing security apps, and limiting activity over public Wi-Fi. Implement and enforce incident reporting to help ensure that even the smallest breach is report to management as well as the IT teams. II. Basics still matter and are some of the best defenses against viruses, malware, and other online threats. Assess the assets that are most at risk - data, servers, network - and ensure that the systems are updated with the latest security software, web browser, and operating system. Implement firewall security and run antivirus software after each update.  III. Ensure regular backup of all critical data - whether stored in-house or on the cloud. Run scheduled attack drills and stress tests to identify vulnerabilities and ensure that data restoration and business continuity are executed as planned.
Which of the following statements are true?
Statement I Big data refers to no precise quantity, but generally refers to data in the range of Petabytes and Exabyte, i.e. billions to trillions of records, all from various sources. Big data is generated much faster. than traditional data in much larger quantities.
Statement II Big data interests industries because they are able to learn more patterns and curious variances than smaller data sets, with the capability to provide valuable insights into consumer behaviour, weather systems, financial market activity, or other phenomena.
Statement III Various departments and product lines use various applications within most organisations and store data in separate datasets. These separate databases may contain similar data, but data from one data base to another is not always consistent. This is called data silo.