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Cooked eggplant can be stored either refrigerated or frozen. If refrigerating it, store within 2 hours of cooking, keeping it inside of an airtight container. It doesn't need to be wrapped unless you don't have an airtight container, in which case cover it with either plastic food wrap or kitchen foil, wrapping as tightly as you can without squashing the cooked flesh. It will keep for 2 to 5 days refrigerated. If freezing, place inside quality freezer bags or an airtight container suitable for freezing. Label and date so that you remember when it went in. Frozen cooked eggplant will keep for up to 10 to 12 months maximum. However, it is best used earlier, as the longer it is kept, the more flavor it will lose.