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In vivo magnetic resonance spectroscopy is a specialized technique associated with magnetic resonance imaging.

Magnetic resonance spectroscopy , also known as nuclear magnetic resonance spectroscopy, is a non-invasive, ionizing-radiation-free analytical technique that has been used to study metabolic changes in brain tumors, strokes, seizure disorders, Alzheimer's disease, depression, and other diseases affecting the brain. It has also been used to study the metabolism of other organs such as muscles. In the case of muscles, NMR is used to measure the intramyocellular lipids content.

Magnetic resonance spectroscopy is an analytical technique that can be used to complement the more common magnetic resonance imaging in the characterization of tissue. Both techniques typically acquire signal from hydrogen protons , but MRI acquires signal primarily from protons which reside within water and fat, which are approximately a thousand times more abundant than the molecules detected with MRS. As a result, MRI often uses the larger available signal to produce very clean 2D images, whereas MRS very frequently only acquires signal from a single localized region, referred to as a "voxel". MRS can be used to determine the relative concentrations and physical properties of a variety of biochemicals frequently referred to as "metabolites" due to their role in metabolism.

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